Genome Browser (instructions)

Genome Annotation (High-Quality Genes)

Genome Overview 
(Genes vs. TEs - idiogram map)

Red: TEs - Blue: Genes

Annotation Features and Functional Results

BLAST

BLAST genome, proteins, CDS, 
and gene models.

Go!

OrthoVenn3

Pre-Computed OrthoVenn3 analyses across close-related species.

GO!

Functional Annotation

Functional Annotation Plots: EC numbers, GOs, Transposable elements and others

GO!

Program to Assemble Spliced Alignments Web Portal.  Summary report of the annotation (EVidence Modeler).

Go!

Pre-computed plantiSMASH providing the annotation and analysis of secondary metabolite biosynthesis gene clusters.

GO!

OMArk is a software to assess the quality of gene repertoire annotated from a genomic sequence - also called proteome.

GO!

Dowload genomic and annotation data

Genome Sequence (fasta) | ptDNA (gbk) | mtDNA (gbk) 
Annotation (gene models and functional annotation) (gff3 file)
Genes (fasta) | Proteins (fasta) | CDS (fasta)
Transposable Elements Annotation (gff3 file) | (FASTA)
PASA Assemblies (gff3) | (fasta)
RNAseq aligned data (bam)

The data is also avaliable at GenBank

PRJNA470961

Genome Browser Content and Instructions

jBrowser2 is a platform for visualizing genomic data. The  A. Sellowiana  genome browser contains the following tracks:  a) the gene models accompanied by annotation integrated in InterProScan visualization of each coding region; b) Transposable Elements and Repeats Annotation; c) PASA assemblies; d) tRNA and rRNA annotation and e) Aligned  RNAseq data, and other annotation features.
Use the "open track selector" to navigate into the different and avaliable tracks.

About

The Pêra Orange, also known as Pêra Rio, Pêra Coroa, or simply Pêra, belongs to the class of common sweet oranges and is widely recognized as the most cultivated variety in Brazil. Its popularity stems from its exceptional versatility, producing fruit highly valued for both fresh consumption and for the preparation of fresh juices and a wide range of desserts. In addition to its superior flavor, the Pêra Orange is renowned for its juiciness, vibrant color, and ease of cultivation across various regions of the country, making it a staple in Brazilian citrus farming. This combination of qualities makes it a favorite among both consumers and producers alike.

Genome Facts

- Genome Size:  620,585,079 bp;
- Number of chromosomes: 18 (2n=18);
- Number of genes: 58,171​ (67,796 CDS);
- Gene vs. TEs content:  29;2% of genome is covered by genes and ​% is covered by TEs.
- BUSCO score genome: C:99.1%[S:2.2%,D:96.9%],F:0.4%,M:0.5%,n:1614,E:1.3%  (​embryophyta_odb10).
- BUSCO score annotation: C:99.5%[S:2.1%,D:97.4%],F:0.1%,M:0.4%,n:1614  (​embryophyta_odb10)